Debbie Almontaser dreamed of starting a public school like no other in New York City. Children of Arab descent would join students of other ethnicities. A week before the school was due to start she was forced to step down. Daniel Pipes who lead the campaign against her said “It is hard to see how violence, how terrorism will lead to the implementation of sharia. It is much easier to see how, working through the system you can promote radical Islam.”

Debbie Almontaser dreamed of starting a public school like no other in New York City. Children of Arab descent would join students of other ethnicities, learning Arabic together. By graduation, they would be fluent in the language and groomed for the country’s elite colleges. They would be ready, in Ms. Almontaser’s words, to become “ambassadors of peace and hope.”

The academy’s troubles reach well beyond its cramped corridors in Boerum Hill. The school’s creation provoked a controversy so incendiary that Ms. Almontaser stepped down as the founding principal just weeks before classes began last September. Ms. Almontaser, a teacher by training and an activist who had carefully built ties with Christians and Jews, said she was forced to resign by the mayor’s office following a campaign that pitted her against a chorus of critics who claimed she had a militant Islamic agenda.

In newspaper articles and Internet postings, on television and talk radio, Ms. Almontaser was branded a “radical,” a “jihadist” and a “9/11 denier.” She stood accused of harboring unpatriotic leanings and of secretly planning to proselytize her students. Despite Ms. Almontaser’s longstanding reputation as a Muslim moderate, her critics quickly succeeded in recasting her image.

The conflict tapped into a well of post-9/11 anxieties. But Ms. Almontaser’s downfall was not merely the result of a spontaneous outcry by concerned parents and neighborhood activists. It was also the work of a growing and organized movement to stop Muslim citizens who are seeking an expanded role in American public life. The fight against the school, participants in the effort say, was only an early skirmish in a broader, national struggle.

“It’s a battle that’s really just begun,” said Daniel Pipes, who directs a conservative research group, the Middle East Forum, and helped lead the charge against Ms. Almontaser and the school.

In the aftermath of Sept. 11, critics of radical Islam focused largely on terrorism, scrutinizing Muslim-American charities or asserting links between Muslim organizations and violent groups like Hamas. But as the authorities have stepped up the war on terror, those critics have shifted their gaze to a new frontier, what they describe as law-abiding Muslim-Americans who are imposing their religious values in the public domain.

Mr. Pipes and others reel off a list of examples: Muslim cabdrivers in Minneapolis who have refused to take passengers carrying liquor; municipal pools and a gym at Harvard that have adopted female-only hours to accommodate Muslim women; candidates for office who are suspected of supporting political Islam; and banks that are offering financial products compliant with sharia, the Islamic code of law.

The danger, Mr. Pipes says, is that the United States stands to become another England or France, a place where Muslims are balkanized and ultimately threaten to impose sharia.

“It is hard to see how violence, how terrorism will lead to the implementation of sharia,” Mr. Pipes said. “It is much easier to see how, working through the system — the school system, the media, the religious organizations, the government, businesses and the like — you can promote radical Islam.”

Mr. Pipes refers to this new enemy as the “lawful Islamists.”

They are carrying out a “soft jihad,” said Jeffrey Wiesenfeld, a trustee of the City University of New York and a vocal opponent of the Khalil Gibran school.

Muslim leaders, academics and others see the drive against the school as the latest in a series of discriminatory attacks intended to distort the truth and play on Americans’ fear of terrorism. They say the campaign is also part of a wider effort to silence critics of Washington’s policy on Israel and the Middle East.

“This is a political, ideological agenda,” said John Esposito, a professor of international affairs and Islamic studies at Georgetown University who has been a focus of Mr. Pipes’s scrutiny. “It’s an agenda to paint Islam, not just extremists, as a major problem.”

That portrait, Muslim and Arab advocates contend, is rife with a bias that would never be tolerated were it directed at other ethnic or religious groups. And if Ms. Almontaser’s story is any indication, they say, the message of her critics wields great power.

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